MVAPICH 3.0b Quick Start Guide

MVAPICH Team
Network-Based Computing Laboratory
Department of Computer Science and Engineering
The Ohio State University
http://mvapich.cse.ohio-state.edu
Copyright (c) 2001-2023
Network-Based Computing Laboratory,
headed by Dr. D. K. Panda.
All rights reserved.

Last revised: May 10, 2023

1 Overview

This Quick Start contains the necessary information for MVAPICH users to download, install, and use MVAPICH 3.0b. Please refer to our User Guide for the comprehensive list of all features and instructions about how to use them.

MVAPICH (pronounced as “em-vah-pich”) is an open-source MPI software to exploit the novel features and mechanisms of high-performance networking technologies (InfiniBand, iWARP, RDMA over Converged Enhanced Ethernet (RoCE v1 and v2), Slingshot 10, and Rockport Networks) and deliver best performance and scalability to MPI applications. This Beta release of MVAPICH 3.0 adds support for the Cray Slingshot 11, Cornelis OPX, and Intel PSM3 interconnects through the OFI libfabric library, and for the UCX communication library.

Please note that as this is an Alpha release, not all features have been implemented and not all performance will be optimal. For best performance on Mellanox InfiniBand, RoCE, iWARP, Slingshot 10 or lower, Rockport Networks, and Intel TrueScale or Omni-Path adapters with PSM2, please use MVAPICH 2.3.7.

This software is developed in the Network-Based Computing Laboratory (NBCL), headed by Prof. Dhabaleswar K. (DK) Panda since 2001.

More details on MVAPICH software, users list, mailing lists, sample performance numbers on a wide range of platforms and interconnects, a set of OSU benchmarks and related publications can be obtained from our website.

2 Build MVAPICH from Source

The MVAPICH 3.0b source code package includes MPICH 3.4.3. All the required files are present in a single tarball.

2.1 Download & Unpack

Download the most recent distribution tarball from http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-3.0b.tar.gz

$ wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-3.0b.tar.gz  
$ gzip -dc mvapich2-3.0b.tar.gz | tar -x  
$ cd mvapich2-3.0b

2.2 Configure

If you have either UCX of OFI (libfabric) installed on your system on a default PATH you can use the default configuration to automatically detect the installed communication library…

$ ./configure

2.2.1 The UCX Device - IB Networks Adapters

If you’re using a Mellanox InfiniBand, RoCE, iWARP, Slingshot 10, or Rockport Networks network adapter you can use the UCX library configuration…

$ ./configure --with-device=ch4:ucx

If a UCX installation is available on a system PATH that version will be used, otherwise the included version will be built. To configure with a particular version of UCX please use the following configuration…

$ ./configure --with-device=ch4:ucx --with-ucx=[PATH]

To force the included version to be built, you may use the following…

$ ./configure --with-device=ch4:ucx --with-ucx=embedded

2.2.2 The OFI Device - PSM/OPX Adapters

If you’re using an Intel TrueScale, Intel Omni-Path, or Intel Columbiaville adapter you should use the OFI library configuration…

$ ./configure --with-device=ch4:ofi

If an OFI installation is available on a system PATH that version will be used, otherwise the included version will be built. The included version of OFI is v1.15.1 and will support the PSM, PSM2, PSM3, and OPX libraries. If you require a different libfabric version please use the following…

$ ./configure --with-device=ch4:ofi --with-libfabric=[PATH]

To force the included version to be built, you may use the following…

$ ./configure --with-device=ch4:ofi --with-libfabric=embedded

2.2.3 The OFI Device - Cray Slingshot 11 Adapters

If you’re using a Cray Slingshot 11 Adapater you must use the OFI library configuration…

$ ./configure --with-device=ch4:ofi --with-libfabric=[PATH]

Where [PATH] points to the directory with the custom Cray libfabric library installed. This path should include both a lib and include directory. Using a non-Cray version of libfabric, or the embedded version, is not supported and will lead to poor performance. To use the Cray Slingshot 11 interconnect, please set the CVAR ‘MPIR_CVAR_OFI_USE_PROVIDER=cxi‘ to ensure that the Cray CXI provider is used by libfabrics. Other providers are typically detected at runtime, but can be also be explicitly set in a similar manner. From the libfabrics side, a provider may also be forced by setting ‘FI_PROVIDER=provname‘.

2.2.4 Other Configure Options

––prefix
This option tells the build system where to install mvapich2. If this option is not given mvapich2 will be installed in /usr/local.
––disable-shared
This option tells the build system to create static libraries only. By default, both the shared and static libraries are built and installed.
––enable-g=all ––enable-error-messages=all
This option controls the amount of debugging information available in the MPI library. By default these are disabled since this will affect the size and speed of the MPI library.

2.2.5 More Options

MVAPICH supports many other configure and run time options which may be useful for advanced users. Please refer to our User Guide for more complete details.

2.3 Build & Install

$ make -j      # parallel build  
$ make install

3 Run MPI Program

In this section we will demonstrate how to build and run a hello world program which uses mpi.

////////////////////////////////////////////////////////////////////////////////  
.Sample MPI code [mpihello.c]  
--------------------------------------------------------------------------------  
#include <mpi.h>  
#include <stdio.h>  
#include <unistd.h>  
 
int main(int argc, char ⋆argv[])  
{  
    int rank;  
    char hostname[256];  
 
    MPI_Init(&argc, &argv);  
    gethostname(hostname, 256);  
    MPI_Comm_rank(MPI_COMM_WORLD, &rank);  
    printf("rank %d on %s says hello!\n", rank, hostname);  
    MPI_Finalize();  
    return 0;  
}  
--------------------------------------------------------------------------------  
////////////////////////////////////////////////////////////////////////////////

3.1 Build & Run

$ mpicc -o mpihello mpihello.c <1>  
$ mpiexec -f hosts -np 2 ./mpihello <2>

  1. mpicc is one of the basic commands used to compile MPI applications. This, along with mpicxx, mpif77, and mpif90, are wrapper scripts that invoke the compiler used to compile the MVAPICH library. Use of these scripts are recommended over invoking the compiler directly and adding the CFLAGS and LDFLAGS
  2. mpiexec is used to launch MPI programs. This command tells mpiexec to launch 2 ./mpihello processes using the nodes specified in the hostfile hosts.

3.1.1 Using mpiexec

syntax

mpiexec <options> -genvlist <env_var1>[,<env_var2>...] <command>

options

-hostfile
specify the location of the hostfile

Hostfile Format The mpiexec hostfile format allows for users to specify hostnames, one per line.

The following demonstrates the distribution of MPI ranks when using different hostfiles:

Examples:

hosts1
node1  
node2

hosts2
node1  
node1  
node2  
node2

Output of mpihello with different hostfiles
$ mpiexec -f hosts1 -n 4 ./mpihello  
rank 0 on node1 says hello!  
rank 1 on node2 says hello!  
rank 2 on node1 says hello!  
rank 3 on node2 says hello!  
 
$ mpiexec -f hosts2 -n 4 ./mpihello  
rank 0 on node1 says hello!  
rank 1 on node1 says hello!  
rank 2 on node2 says hello!  
rank 3 on node2 says hello!

-n
Number of mpi processes to launch.
-ppn
Number of mpi processes to launch per node.

[IMPORTANT]
================================================================================
The -ppn option will create a block of N processes on each node in the hostfile. This is analogous to using the ‘:#‘ syntax in the hostfile. Using both of these capabilities to create a block ordering will be multiplicitive. Ie: setting node1:2 in the hostfile and -ppn 2 on the command line will result in 4 processes being allocated to node1.

If you are using the SLURM resource manager, ommitting a hostfile will result in mpiexec using the SLURM_JOB_HOSTLIST environment variable to determine the hosts. It will distribute processes accross all active nodes in the job according the value set by -ppn.

env variables
Environment variables are specified using the ‘NAME=VALUE’ syntax using either the ‘-genv‘ or ‘-genvlist‘ flag. These are used to export MPICH_CVAR values to control underlying MPICH functionality as well as MVP_ CVARS to control MVAPICH specific functionality.

Pass an environment variable named FOO with the value BAR

$ mpiexec -f hosts -np 2 -genv FOO=BAR ./mpihello

3.1.2 Other Launchers

By default MVAPICH is built with mpirun_rsh and the MPICH Hyrda process manager. Hydra can be invoked using the mpiexec binary in a standard install.

To configure with SLURM’s srun launcher as your launcher, please use the following configuration:

$ ./configure --with-pm=slurm --with-pmi=pmi1

Or, if you are on a Cray cluster:

$ ./configure --with-pm=slurm --with-pmi=cray

If your SLURM or Cray libpmi.so, pmi.h, libpmi2.so, and pmi2.h files are on non-standard paths you may need to add the appropriate lib and include directories to LD_LIBRARY_PATH, LIBRARY_PATH and CPATH respectively.

Please look at our User Guide for more complete details.

4 More Information

Please see the following for more information.